{"id":6350,"date":"2023-09-05T15:35:13","date_gmt":"2023-09-05T13:35:13","guid":{"rendered":"https:\/\/semmelweis.hu\/elettan\/?page_id=6350"},"modified":"2025-09-03T14:42:01","modified_gmt":"2025-09-03T12:42:01","slug":"bioinformatics-and-genome-analysis-in-the-biomedical-research","status":"publish","type":"page","link":"https:\/\/semmelweis.hu\/elettan\/en\/teaching\/ph-d-courses\/bioinformatics-and-genome-analysis-in-the-biomedical-research\/","title":{"rendered":"Bioinformatics and genome analysis in the biomedical research"},"content":{"rendered":"<div class=\"responsive-tabs\">\n<h2 class=\"tabtitle\">Schedule<\/h2>\n<div class=\"tabcontent\">\n\n<p style=\"text-align: center\">Presentations are on Thursdays at 16:00 \u2013 17:30<\/p>\n<p style=\"text-align: center\">At EOK, Institute of Physiology, Library<\/p>\n<p style=\"text-align: center\">&#8222;A&#8221; wing, 3rd floor<\/p>\n<p style=\"text-align: center\">First class is on 11.09.2025<\/p>\n\n<\/div><h2 class=\"tabtitle\">About the course<\/h2>\n<div class=\"tabcontent\">\n\n<p style=\"text-align: justify\">The aim of the course is providing knowledge and support to the students in their everyday lab life. During the course the most important methods and the most important databases of bioinformatics are introduced; the relevant algorithms behind them; the applications implementing them; the use of them; their limitations and the proper interpretation of the results of these applications. The course is dominantly based on the publicly available bioinformatics web resources.<br \/>\nThe course is made of 13 classes (12 presentation and 1 practical, 2 credit). The classes are once per week over the term 90 minutes each presented by Dr Miklos Cserzo.<\/p>\n<ol>\n<li>Introduction<\/li>\n<li>Biological databases<\/li>\n<li>Sequence alignment<\/li>\n<li>Multiple sequence alignment<\/li>\n<li>Database search<\/li>\n<li>Integrated biological databases<\/li>\n<li>Modeling in biology<\/li>\n<li>Sequence analysis \u2013 presentation<\/li>\n<li>Sequence analysis \u2013 practice<\/li>\n<li>Correlation, clustering<\/li>\n<li>High throughput methods<\/li>\n<li>System biology<\/li>\n<li>Molecular modeling<\/li>\n<li>Final exam<\/li>\n<\/ol>\n\n<\/div><h2 class=\"tabtitle\">Supplementary information<\/h2>\n<div class=\"tabcontent\">\n\n<ul>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/09\/The-Roots-of-Bioinformatics-in-Theoretical-Biology.pdf\">The Roots of Bioinformatics in Theoretical Biology<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/09\/Bioinformatics-alive-and-kicking.pdf\">Bioinformatics alive and kicking<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/09\/Heavy-use-of-equations-impedes-communication-among-biologists.pdf\">Heavy use of equations impedes communication among biologists<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/09\/Discovery-of-principles-of-nature-from-mathematical-modeling-of-DNA-microarray-data.pdf\">Discovery of principles of nature from mathematical modeling of DNA microarray data<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/09\/MisPred-a-resource-for-identification-of-erroneous-protein-sequences-in-public-databases.pdf\">MisPred a resource for identification of erroneous protein sequences in public databases<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/09\/FixPred-a-resource-for-correction-of-erroneous-protein-sequences.pdf\">FixPred: a resource for correction of erroneous protein sequences<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/09\/eTBLAST-a-web-server-to-identify-expert-reviewers.pdf\">eTBLAST: a web server to identify expert reviewers,<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/09\/The-Ensembl-Analysis-Pipeline.pdf\">The Ensembl Analysis Pipeline<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/09\/The-Ensembl-Automatic-Gene-Annotation-System.pdf\">The Ensembl Automatic Gene Annotation System<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2017\/12\/An-online-bioinformatics-curriculum.pdf\">An online bioinformatics curriculum<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2017\/12\/A-New-Online-Computational-Biology-Curriculum.pdf\">A New Online Computational Biology Curriculum<\/a><\/li>\n<li><a href=\"https:\/\/semmelweis.hu\/elettan\/files\/2015\/10\/RV100.zip\">Balibase (sample)<\/a><\/li>\n<\/ul>\n<\/div><\/div>\n","protected":false},"excerpt":{"rendered":"<p>Presentations are on Thursdays at 16:00 \u2013 17:30 At EOK, Institute of Physiology, Library &#8222;A&#8221; wing, 3rd floor First class is on 11.09.2025 The aim of the course is providing knowledge and support to the students in their everyday lab life. During the course the most important methods and the most important databases of bioinformatics &hellip;<\/p>\n","protected":false},"author":133,"featured_media":0,"parent":3851,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"categories":[],"tags":[],"class_list":["post-6350","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/pages\/6350","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/users\/133"}],"replies":[{"embeddable":true,"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/comments?post=6350"}],"version-history":[{"count":9,"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/pages\/6350\/revisions"}],"predecessor-version":[{"id":7264,"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/pages\/6350\/revisions\/7264"}],"up":[{"embeddable":true,"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/pages\/3851"}],"wp:attachment":[{"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/media?parent=6350"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/categories?post=6350"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/semmelweis.hu\/elettan\/wp-json\/wp\/v2\/tags?post=6350"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}