{"id":15749,"date":"2023-05-08T13:52:11","date_gmt":"2023-05-08T11:52:11","guid":{"rendered":"https:\/\/semmelweis.hu\/corefacility\/?page_id=15749"},"modified":"2024-03-01T13:35:47","modified_gmt":"2024-03-01T12:35:47","slug":"spatial_transcriptomicsand_proteomics","status":"publish","type":"page","link":"https:\/\/semmelweis.hu\/corefacility\/home\/spatial_transcriptomicsand_proteomics\/","title":{"rendered":"Spatial transcriptomics and proteomics"},"content":{"rendered":"
\n

Head of Core Facility
\n<\/strong>Csaba B\u00f6d\u00f6r, PhD<\/p>\n

Core Facility Address
\n<\/strong>Department of Pathology and Experimental Cancer Research
\n\u00dcll\u0151i \u00fat 26.
\n1085 Budapest<\/p>\n

Contact E-mail
\n<\/strong>to: Csaba B\u00f6d\u00f6r, PhD
\n<\/strong>bodor.csaba1@semmelweis.hu<\/a><\/p>\n

Number of staff
\n<\/strong>2<\/p>\n

Quality Control
\n<\/strong>ISO 9001<\/p>\n<\/div>\n

What we offer<\/strong><\/h4>\n

NanoString GeoMx\u00ae DSP experiment projects with the reagent kits available from the manufacturer.<\/p>\n

    \n
  • NanoString GeoMx\u00ae DSP tissue slide preparation and region-of-interest selection for RNA targets<\/li>\n
  • NanoString GeoMx\u00ae DSP tissue slide preparation and region-of-interest selection for protein targets<\/li>\n
  • Readout with the NanoString nCounter system or next-generation sequencing (Illumina MiSeq or NextSeq2000)<\/li>\n
  • Downstream data analysis using the on-board software of the GeoMx\u00ae DSP system<\/li>\n
  • Remote Desktop approaches can be used to instrument the GeoMx platform in order to afford ROI selection and data analysis for external researchers.<\/li>\n<\/ul>\n

    Why work with us<\/strong><\/h4>\n
      \n
    • \n
      \n

      Our spatial transcriptomics and proteomics core facility utilizing the Nanostring GeoMx\u00ae platform provides an end-to-end solution <\/span>for spatially resolved analyses with downstream next-generation <\/span>sequencing based readouts also available in our laboratory.<\/span><\/p>\n<\/div>\n<\/li>\n<\/ul>\n

      equipmentS<\/strong><\/h4>\n
        \n
      • NanoString\u2019s GeoMx Digital Spatial Profiler (DSP)<\/li>\n
      • MiSeq next-generation sequencer (Illumina)<\/li>\n
      • NextSeq2000\u00a0<\/span>next-generation sequencer (Illumina)<\/span><\/li>\n<\/ul>\n

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        \u00a0<\/h4>\n

        References<\/strong><\/h4>\n